Durand Lab Software

Durand Lab

Software

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Neighborhood Correlation

    Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
    N. Song, J. Joseph, G. B. Davis, D. Durand, PLoS Comp. Biol., May 16, 2008.
        Neighborhood Correlation website

Notung

    Event inference in multidomain families with phylogenetic reconciliation.
   M. Stolzer, K. Siewert, H. Lai, M. Xu, and D. Durand. BMC Bioinformatics 2015, 16(Suppl 14):S8.
       Notung DM

    Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.
   M. Stolzer, H. Lai, M. Xu, D. Sathay, B. Vernot, and D. Durand, 2012. Bioinformatics 28(18):i409-i415; doi:10.1093/bioinformatics/bts386.
       Supplementary information
       Notung 2.8

    A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction.
    D. Durand, B. V. Halldorsson, B. Vernot, 2005. Journal of Computational Biology, 13 (2): 320-335.
   Notung 2.6

Gene Clusters

    The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion
    R. Hoberman, D. Sankoff and D. Durand, 2005. Journal of Computational Biology, 12(8): 1081-1100.
        Link to Mathematica code.

    Individual gene cluster statistics in noisy maps
    N. Raghupathy and D. Durand, 2005. RECOMB Workshop on Comparative Genomics,
    McLysaght and Huson, Eds., Lecture Notes in Bioinformatics vol. 3678, Springer-Verlag, pp. 106-120.
        Link to Mathematica code.