Below are examples of papers using the Short Time-series
Expression Miner (STEM) software or method as part of the data analysis:
Scholz B, Svensson M, Alm H, Sköld K, Fälth M, Kultima K,
Guigoni C, Doudnikoff E, Li Q, Crossman AR, Bezard E, Andrén PE.
Striatal Proteomic Analysis Suggests that First L-Dopa Dose Equates to
Chronic Exposure. PLoS One 2008; 3:e1589.
Yang B, Srivastava S, Deyholos MK, Kav NNV.
Transcriptional profiling
of canola (Brassica napus L.) responses to the fungal pathogen
Sclerotinia sclerotiorum. Plant Science 2007;
173:156-171.
Liu DY-T, Liu C-H, Lai M-T, Lin H-K, Hseu T-H.
Global gene expression profiling of wild type and lysC knockout Escherichia coli
W3110.
FEMS Microbiol Lett 2007; 276: 202-206.
Rizzo LJ, Chen X, Weitzmann M, Sun R, Zhang H.
Analysis of the RPE transcriptome reveals dynamic changes during the development of the outer blood-retinal barrier.
Molecular Vision 2007; 13:1259-1273.
Lulko AT, Buist G, Kok J, Kuipers OP.
Transcriptome Analysis of Temporal Regulation of Carbon Metabolism by CcpA
in Bacillus subtilis Reveals Additional Target Genes.
J Mol Microbiol Biotechnol 2007; 12:82-95.
Martinez I, Lombardia L, Garcia-Barreno B, Dominguez O, Melero JA.
Distinct gene subsets are induced at different time points after human
respiratory syncytial virus infection of A549 cells.
J Gen Virol 2007; 88: 570-581.
Nymark P, Lindholm PM, Korpela MV, Lahti L, Ruosaari S, Kaski S, Hollmen J,
Anttila S, Kinnula VL, Knuutila S.
Gene expression profiles
in asbestos-exposed epithelial and mesothelial lung cell lines.
BMC Genomics 2007; 8:62.
Jiang Y and Deyholos MK.
Comprehensive
transcriptional profiling of NaCl-stressed Arabidopsis roots reveals
novel classes of responsive genes. BMC Plant Biol 2006;
6:25.